Effect of heterogeneity of variance components on genetic evaluation of protein yield in Holstein top sires and dams

Document Type : Research Paper

Authors

Abstract

The objective of this research was to study the heterogeneity of variance components for protein yield from the first three lactations of Iranian Holstein cows which collected from 1983 to 2014 by the Animal Breeding Center and Promotion of Animal Products of Iran. Data set were
141670, 115395 and 82529 records in the first, second and third lactations. Data were classified into three categories of Mediteranean, Dry desert and Humid using Domarten method. The heterogeneity of variances was studied using the Bartlett’s test. The results of Bartlett’s test before data transformation in the first three lactations were significant (P<0.0001) which indicated the heterogeneity of variance in all three climatical regions. In order to reduce or removing the heterogeneity of variances, transformation methods of Logarithmic, Square root and Box-Cox were used which the Square root transformation method caused homogenous variance for protein yield in the third lactation. Genetic parameters, heritability and variance components were estimated by VCE software. The model was included additive genetic effects of animal, herd-year-season and age at calving. Heritability estimates varied from 0.15 to 0.19 and 0.12-0.20 for untransformed and transformed data, respectively. Square root transformation method caused 6.88 and 42.66% of top sires and dams excluded from the usual list, respectively. The results of this study indicated that variance components of milk protein yield in Holstein cows are heterogeneous. Therefore, it is suggested effects of heterogeneity of variance should be considered during genetic evaluation and selection of superior sires and dams.

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Costa, C.N. (1998). An investigation into heterogeneity of variance for milk and fat yields of Holstein cows in Brazilian herd environments. Genetics and Molecular Biology. 22(3): 375-381.
Dahlin, A., Khan, U.N., Zafar, A.H., Saleem, M., Chaudhry, M.A. and Philipsson, J. (1998). Genetic and environmental causes of variation in milk production traits of Sahiwal cattle in Pakistan. Journal of Animal Science. 66(2): 307-318.
DeVeer, J.C. and Van Vleck, L.D. (1987). Genetic parameters for first lactation milk yields at three levels of herd production. Journal of Dairy Science. 70:1434.
Dodenhoff, J. and Swalve, H.H. (1998). Heterogeneity of variances across regions of northern Germany and adjustment in genetic evaluation. Livestock Production Science. 53: 225-236.
Dong, M.C. and Mao, I.L. (1990). Heterogeneity of co variance and heritability in different levels of intraherd milk production variance and of herd average. Journal of Dairy Science. 73(3): 843-851.
Gengler, N., Wiggans, G.R. and Gillon, A. (2004). Estimated heterogeneity of phenotypic variance of test-day yield with a structural variance model. Journal of Dairy Science. 87(6): 1908-1916.
Gianola, D. (1986). On selection criteria and estimation of parameters when the variance is heterogeneous. Theoretical and Applied Genetics. 72: 671-677.
Groeneveld, E., Kovac, M. and Mielenz, N. (2008). VCE User’s Guide and Reference Manual. Version 6.0. Institute of Farm Animal Genetics, Neustadt, Germany. 1-125.
Ibanez, M. A., Carabano, M.J., Foulley, L. and Alenda, R. (1996). Heterogeneity of herd-period phenotypic variances in the Spanish Holstein­Friesian cattle: sources of heterogeneity and genetic evaluation. Livestock Production Science. 45: 137-147.                                                                                                                               
 
Ibanez, M.A., Carabano, M.J. and Alenda, R. (1999). Identification of sources of heterogeneous residual and genetic variances in milk yield data from the Spanish Holstein-Friesian population and impact on genetic evaluation. Livestock Production Science. 59(1): 33-49.
Ibanez-Escriche, N., Varona, L., Sorensen, D. and Noguera, J.L. (2008a). A study of heterogeneity of environmental variance for slaughter weight in pigs. Animal. 2(1): 19-26.
Lidauer, M., Emmerling, R. and Mantysaari, E.A. (2008). Multiplicative random regression model for heterogeneous variance adjustment in genetic evaluation for milk yield in Simmental. Journal of Animal Breeding and Genetic. 125(3): 147-159.
Markus , S., Mantysaari, E.A., Stranden, I., Eriksson, J.A. and Lidauer, M.H. (2014). Comparison of multiplicative heterogeneous variance adjustment models for genetic evaluations. Journal of Animal Breeding and Genetics. 131(3):237-246.
Nikolaou, M., Kominakis, A.P., Rogdakis, E. and Zampitis, S. (2004). Effect of mean and variance heterogeneity on genetic evaluations of Lesbos dairy sheep. Livestock Production Science. 88(1-2): 107-115.
Robert-Granie, C., Bonaıti, B., Boichard, D. and Barbat, A. (1999). Accounting for variance heterogeneity in French dairy cattle genetic evaluation. Livestock Production Science. 60(2-3): 343-357.
Sargolzaei, M., Iwaisaki, H. and Colleau, J.J. (2006[v1] ). CFC: A tool for monitoring genetic diversity. Proc. 8th World Congr. Genet. Appl. Livest. Prod., CD-ROM Communication 27-28. Belo Horizonte, Brazil, Aug. 13-18.
Short, T.H., Blake, R.W., Quaas, R.L. and Van VlecK, L.D. (1990). Heterogeneous within-herd variance. 1. Genetic parameters for first and second lactation milk yields of grade Holstein cows. Journal of Dairy Science. 73(11): 3312-3320.
Strabel, T. and Szwaczkowski, T. (1997). Additive genetic and permanent environmental variance components for test day milk traits in Black-White cattle. Livestock Production Science. 48: 91-98.
Strabel, T., Jankowski, T. and Jamrozik, J. (2006). Adjustments for heterogeneous herd-year variances in a random regression model for genetic evaluations of polish Black-and-White cattle. Journal of Applied Genetics. 47(2): 125-130.
Urioste, J.I., Gianola, D., Rekaya, R., Fikse, W.F. and Weigel, K.A. (2001). Evaluation of extent and amount of heterogeneous variance for milk yield in Uruguayan Holsteins. Journal of Animal Science. 72(2): 259-268.
Varkoohi, S., Merabani-Yeganeh, H., Miraei-Ashtiyani, S.R. and Ghavi-Hossein-zadeh, N. (2007). Heterogeneity of variance for milk traits at climitical regions in Holstein dairy cattle in Iran and the best methods for data transformation. Pakistan journal of biological sciences. 10(9):1556-1558.
Visscher, P.M., Thompson, R. and Hill, W.G. (1991). Estimation of genetic and environmental variances for fat yield in individual herds and an investigation into heterogeneity of variance between herds. Livestock Production Science. 28(4): 273-290.